- Group 101Early Detection of Diabetes and Comorbidities
- Group 102Elucidation of the Pathogenesis of Diabetes and Comorbidities Based on Inter-Organ Networks
- Group 103Development of Methods for the Prevention and Treatment of Diabetes and Comorbidities
- Group 104Understanding Homeostasis and Pathology Through Mathematical and Computational Science Approaches
Group 101Early Detection of Diabetes and Comorbidities
Group 101-1Development of Simple Methods for Detecting Diabetes and Comorbidities
Principal investigator
Katsuhito Fujiu
Professor, Institute of Integrated Research, Institute of Science Tokyo
Chronic stress arising from conditions such as heart failure is not confined to the affected organ. It is inscribed in hematopoietic stem cells (HSCs) as epigenetic change, a form of innate immune memory that predisposes the individual to subsequent multimorbidity and disease recurrence. This project aims to establish a diagnostic method that reads this stress memory and predicts multimorbidity risk before disease onset. Using animal models of heart failure, aging and metabolic stress, together with single-cell transcriptomic and chromatin accessibility analyses, we are defining how stress memory is written into HSCs. In parallel, we are developing an approach that captures the state of HSCs and monocytes from a small volume of human peripheral blood and interprets it using AI. We are also advancing non-contact sensing of physiological information, such as camera-based measurement of vital signs, so that data acquired unobtrusively in daily life can be integrated with these blood-derived indices. Together, these technologies are intended to stratify risk before symptoms appear and to enable genuinely pre-symptomatic prevention.
Notable Papers
- Goto K, et al. Altered bone marrow niche forms central innate immune memory driving cardiac dysfunction. Nat Commun. 17(1):8261, 2026.
https://doi.org/10.1038/s41467-026-76178-z - Hasumi E, et al. Heart failure monitoring with a single‑lead electrocardiogram at home. Int J Cardiol. 432:133203, 2025.
https://doi.org/10.1016/j.ijcard.2025.133203 - Uchida R, et al. Detection of hypertension using a target spectral camera: a prospective clinical study. Sci Rep. 14(1):21882, 2024.
https://doi.org/10.1038/s41598-024-70903-8 - Nakayama Y, Fujiu K. Innate immune memory in macrophage differentiation and cardiovascular diseases. Inflamm Regen. 45(1):17, 2024.
https://doi.org/10.1186/s41232-025-00382-5 - Nakayama Y, et al. Heart failure promotes multimorbidity through innate immune memory. Sci Immunol. 9(95):eade3814, 2024.
https://doi.org/10.1126/sciimmunol.ade3814
Tetsuya Yamada
Professor, Graduate School of Medical and Dental Sciences, Institute of Science Tokyo
We are developing an AI-powered method to detect very early signs of diabetes using contact devices without the need for blood tests. Furthermore, we are collaborating with industry to advance research so that this developed technology can enable early detection of diabetes, leading to a society where the onset of diabetes can be prevented through lifestyle interventions.
Notable Papers
- Koga D, et al. Artificial intelligence identifies individuals with prediabetes using single-lead electrocardiograms. Cardiovasc Diabetol. 24(1):415, 2025.
https://doi.org/10.1186/s12933-025-02982-4 - Horino M, et al. Car4-positive adipocyte progenitor cells adapt to the aging environment and work as protection against ROS via glutathione metabolism. Sci Rep. 15(1):31922, 2025.
https://doi.org/10.1038/s41598-025-17231-7 - Takeuchi A, et al. Sex difference in BAT thermogenesis depends on PGC-1α-mediated phospholipid synthesis in mice. Nat Commun. 16(1):6072, 2025.
https://doi.org/10.1038/s41467-025-61219-w - Murakami M, et al. Single-Nucleus Analysis Reveals Tumor Heterogeneity of Aldosterone-Producing Adenoma. Hypertension. 81(2):361-371, 2024.
https://doi.org/10.1161/HYPERTENSIONAHA.123.21446
Group 101-2Development of a Genomic Risk Assessment Method for Diabetes
Principal investigator
By integrating family history, epidemiological data, and clinical information into the Palette PRS, which is categorized by clinical subtypes based on gene pathways and inter-organ network information -we aim to develop and refine a precise risk assessment model for the pre-diabetic and ultra-early stages of diabetes. Furthermore, we will extend this approach to the prediction of complications and validate it through a combination of retrospective studies using existing data and prospective studies in clinical settings. Through this, we will clarify the practical applicability and challenges of the method, feed our findings back into basic research, and promote collaborative clinical and basic research that integrates pathophysiological elucidation with model refinement.
Notable Papers
- Tanabe H, et al. Machine learning-based reproducible prediction of type 2 diabetes subtypes. Diabetologia. 67(11):2446-2458, 2024.
https://doi.org/10.1007/s00125-024-06248-8 - Takayama J, et al. A fine-scale genetic map of the Japanese population. Clin Genet. 106(3):284-292, 2024.
https://doi.org/10.1111/cge.14536
Group 101-3Development of a Diagnostic Method for Multiple Disease Risks Using Hematopoietic Stem Cells
Principal investigator
Chronic stress arising from conditions such as heart failure is not confined to the affected organ. It is inscribed in hematopoietic stem cells (HSCs) as epigenetic change, a form of innate immune memory that predisposes the individual to subsequent multimorbidity and disease recurrence. This project aims to establish a diagnostic method that reads this stress memory and predicts multimorbidity risk before disease onset. Using animal models of heart failure, aging and metabolic stress, together with single-cell transcriptomic and chromatin accessibility analyses, we are defining how stress memory is written into HSCs. In parallel, we are developing an approach that captures the state of HSCs and monocytes from a small volume of human peripheral blood and interprets it using AI. We are also advancing non-contact sensing of physiological information, such as camera-based measurement of vital signs, so that data acquired unobtrusively in daily life can be integrated with these blood-derived indices. Together, these technologies are intended to stratify risk before symptoms appear and to enable genuinely pre-symptomatic prevention.
Notable Papers
- Goto K, et al. Altered bone marrow niche forms central innate immune memory driving cardiac dysfunction. Nat Commun. 17(1):8261, 2026.
https://doi.org/10.1038/s41467-026-76178-z - Hasumi E, et al. Heart failure monitoring with a single‑lead electrocardiogram at home. Int J Cardiol. 432:133203, 2025.
https://doi.org/10.1016/j.ijcard.2025.133203 - Uchida R, et al. Detection of hypertension using a target spectral camera: a prospective clinical study. Sci Rep. 14(1):21882, 2024.
https://doi.org/10.1038/s41598-024-70903-8 - Nakayama Y, Fujiu K. Innate immune memory in macrophage differentiation and cardiovascular diseases. Inflamm Regen. 45(1):17, 2024.
https://doi.org/10.1186/s41232-025-00382-5 - Nakayama Y, et al. Heart failure promotes multimorbidity through innate immune memory. Sci Immunol. 9(95):eade3814, 2024.
https://doi.org/10.1126/sciimmunol.ade3814
Group 101-4Marker Discovery and Application Using Human Data
Principal investigator
Junken Aoki
Professor, Graduate School of Pharmaceutical Sciences, The University of Tokyo
Our research project is a unique initiative, both domestically and internationally, that centers on lipidomics analysis focusing on plasma phospholipids to identify biomarkers indicating ultra-early-stage risk for diabetes and its comorbidities, and comprehensively investigates the molecular mechanisms—including those mediated by responsible enzymes and GPCRs—as well as interventions using phospholipid supplements. We will proceed with the identification of lipid species correlated with blood glucose levels, HbA1c, insulin resistance indices, and lifestyle data, and elucidate their functions.
Notable Papers
- Iwama T, et al. Visualization of Phospholipid Synthesis on Tissue Sections Using Functional Mass Spectrometry Imaging. Anal Chem. 96(29):11771-11779, 2024.
https://doi.org/10.1021/acs.analchem.4c01219 - Omi J, et al. Phosphatidylserine synthesis controls oncogenic B cell receptor signaling in B cell lymph Iwama T, et al. oma. J Cell Biol. 223(2):e202212074, 2024.
https://doi.org/10.1083/jcb.202212074 - Iwama T, et al. Development of an On-Tissue Derivatization Method for MALDI Mass Spectrometry Imaging of Bioactive Lipids Containing Phosphate Monoester Using Phos-tag. Anal Chem. 93(8):3867-3875, 2021.
https://doi.org/10.1021/acs.analchem.0c04479
Longitudinal data from a human cohort revealed various candidate blood markers correlated with diabetes development. Taking advantage of multi-omics analysis, we will identify the potentially useful markers and their optimal combinations, and proceed with their validation.
Notable Papers
- Imai J, Katagiri H. Neural regulation and manipulation of pancreatic β cells. Trends Endocrinol Metab in press
- Horiuchi T, et al. Redox-dependent liver gluconeogenesis impacts different intensity exercise in mice. Nat Metab 7(10):1991-2003, 2025.
https://doi.org/10.1038/s42255-025-01373-z - Sato D, et al. One-hour postload glucose levels predict mortality from cardiovascular diseases and malignant neoplasms in healthy subjects. PNAS Nexus. 4(6):pgaf179, 2025.
https://doi.org/10.1093/pnasnexus/pgaf179 - Kawana Y, et al. Optogenetic stimulation of vagal nerves for enhanced glucose-stimulated insulin secretion and β cell proliferation. Nat Biomed Eng. 8(7):808-822, 2024.
https://doi.org/10.1038/s41551-023-01113-2 - Sugawara H, et al. A highly sensitive strategy for monitoring real time proliferations of targeted cell types in vivo. Nat Commun. 14(1):3253, 2023.
https://doi.org/10.1038/s41467-023-38897-5 - Takahashi K, et al. Inter-organ insulin-leptin signal crosstalk from the liver enhances survival during food shortages. Cell Rep. 42(5):112415, 2023.
https://doi.org/10.1016/j.celrep.2023.112415 - Yamamoto J, et al. Neuronal signals regulate obesity induced β-cell proliferation by FoxM1 dependent mechanism. Nat Commun. 8(1):1930, 2017.
https://doi.org/10.1038/s41467-017-01869-7 - Imai J, et al. Regulation of Pancreatic β cell Mass by Neuronal Signals from the Liver. Science 322(5905):1250-4, 2008.
https://doi.org/10.1126/science.1163971 - Uno K, et al. Neuronal pathway from the liver modulates energy expenditure and systemic insulin sensitivity. Science 312(5780):1656-9, 2006.
https://doi.org/10.1126/science.1126010
We use GPCR signaling assays to identify the receptors targeted by metabolite markers of diabetes and its associated diseases. Building on this, we develop highly sensitive assays that measure these metabolites in clinical samples. We also apply chemogenetic tools that activate defined GPCR signals on demand, letting us test how each signal contributes to disease and whether its manipulation is therapeutically useful. Our goal is to make diabetes and its related conditions easier to predict and prevent.
Notable Papers
- Kamakura N, et al. Chemogenetic Activation of G12 Signaling Thickens the Epidermis With Enhanced Barrier Function. FASEB Bioadv. 8(8):e70138, 2026.
https://doi.org/10.1096/fba.2026-00042 - Doi K, et al. A luminescent calcium biosensor enabling endpoint measurement of GPCR-mediated calcium signaling. Commun Biol. 9(1):695, 2026.
https://doi.org/10.1038/s42003-026-09920-4 - Kuramoto R, et al. Membrane-domain compartmentalization of active GPCRs by β-arrestins through PtdIns(4,5)P2 binding. Nat Chem Biol. 21(12):1927-1937, 2025.
https://doi.org/10.1038/s41589-025-01967-4 - Sano FK, et al. Insights into G-protein coupling preference from cryo-EM structures of Gq-bound PTH1R. Nat Chem Biol. 21(12):1906-1914, 2025.
https://doi.org/10.1038/s41589-025-01957-6 - Doi K, et al. A cAMP-biosensor-based assay for measuring plasma arginine–vasopressin levels. Sci Rep. 14(1):9453, 2024.
https://doi.org/10.1038/s41598-024-60035-4 - Ono Y, et al. Chemogenetic activation of G12 signaling enhances adipose tissue browning. Signal Transduct Target Ther. 8(1):307, 2023.
https://doi.org/10.1038/s41392-023-01524-2
Takayuki Doi
Professor, Graduate School of Pharmaceutical Sciences, Tohoku University
We synthesize labeled probes for visualizing phospholipids to discover biomarkers for early disease diagnosis and prevention.
Notable Papers
- Ban H, et al. Total Synthesis of JBIR-141 and Its Analogues: Potent Inhibitors of Forkhead Box O3 (FOXO3). Org Lett. 28(30):9591-9595, 2026.
https://doi.org/10.1021/acs.orglett.6c02149 - Sato H, et al. Destruxin E backbone modification effects on osteoclast Morphology: Synthesis and SAR study of N-Desmethyl and N-Methyl analogs. Bioorg Med Chem. 108:117777, 2024.
https://doi.org/10.1016/j.bmc.2024.117777 - Abdelwahid MAS, et al. Synthesis and Biological Evaluation of Lysophosphatidic Acid Analogues Using Conformational Restriction and Bioisosteric Replacement Strategies. ACS Omega. 8(51):49278-49288, 2023.
https://doi.org/10.1021/acsomega.3c07668
By conducting comprehensive analyses of clinical data and lipidomics analysis with a primary focus on phospholipids of clinical samples, we aim to develop innovative clinical diagnostic tests capable of predicting both the initial onset of diabetes and the subsequent progression of its related complications. Through these scientific endeavors, we aim to make substantial contributions to the advancement of preemptive healthcare as well as the broader field of preventive medicine.
Furthermore, we seek to deeply explore and elucidate the complex molecular foundations underlying diabetes, which will help us to develop novel preemptive and preventive therapeutic strategies.
Notable Papers
- Kurano M, et al. Apolipoprotein M/sphingosine 1-phosphate protects against diabetic nephropathy. Transl Res. 258:16-34, 2023.
https://doi.org/10.1016/j.trsl.2023.02.004 - Morita Y, et al. Simultaneous analyses of urinary eicosanoids and related mediators identified tetranor-prostaglandin E metabolite as a novel biomarker of diabetic nephropathy. J Lipid Res. 62:100120, 2021.
https://doi.org/10.1016/j.jlr.2021.100120 - Kurano M, et al. Protection Against Insulin Resistance by Apolipoprotein M/Sphingosine-1-Phosphate. Diabetes. 69(5):867-881, 2020.
https://doi.org/10.2337/db19-0811 - Morita Y, et al. Analysis of urinary sphingolipids using liquid chromatography-tandem mass spectrometry in diabetic nephropathy. J Diabetes Investig. 11(2):441-449, 2020.
https://doi.org/10.1111/jdi.13154
Group 102Elucidation of the Pathogenesis of Diabetes and Comorbidities Based on Inter-Organ Networks
Group 102-1Understanding and Controlling Inter-Organ Networks via the Central and Peripheral Nervous Systems
Principal investigator
We investigate the bidirectional interplay between the central and peripheral nervous systems and the mechanisms by which this interplay coordinates inter-organ networks. Our goal is to identify the neural circuits that govern physiological homeostasis and reveal the principles underlying their function. We further examine how aging and nutritional environments alter these circuits and thereby develop conditions such as obesity, leptin resistance, and diabetes. Ultimately, our study will provide a foundation for developing new therapeutic drugs and technologies to prevent and treat these disorders.
Notable Papers
- Oya M, et al. Age-related ciliopathy: Obesogenic shortening of melanocortin-4 receptor-bearing neuronal primary cilia. Cell Metab. 36(5):1044-1058.e10, 2024.
https://doi.org/10.1016/j.cmet.2024.02.010 - Nakamura Y, et al. Prostaglandin EP3 receptor-expressing preoptic neurons bidirectionally control body temperature via tonic GABAergic signaling. Sci Adv. 8(51):eadd5463, 2022.
https://doi.org/10.1126/sciadv.add5463 - Fukushima A, Kataoka N, Nakamura K. An oxytocinergic neural pathway that stimulates thermogenic and cardiac sympathetic outflow. Cell Rep. 40(12):111380, 2022.
https://doi.org/10.1016/j.celrep.2022.111380 - Nakamura K, Nakamura Y, Kataoka N. A hypothalamomedullary network for physiological responses to environmental stresses. Nat Rev Neurosci. 23(1):35-52, 2022.
https://doi.org/10.1038/s41583-021-00532-x
Using non-invasive magnetic stimulation, we aim to determine whether targeting spinal autonomic circuits that control the pancreas can modulate blood glucose and other metabolic measures. We will assess the feasibility of this approach as a low-burden method for regulating glucose metabolism, with potential application to individuals at the pre-disease stage.
Notable Papers
- Tazoe T, et al. Noninvasive closed-loop spinal stimulation restores leg stepping control in humans with paraplegia. Brain. 149(1):274-289, 2026.
https://doi.org/10.1093/brain/awaf230 - Kawai K, et al. Transsynaptic activation of human lumbar spinal motoneurons by transvertebral magnetic stimulation. Neurosci Res. 200:20-27, 2024.
https://doi.org/10.1016/j.neures.2023.10.001 - Sasada S, et al. Assessment of safety of self-controlled repetitive trans-vertebral magnetic stimulation. Clin Neurophysiol. 132(12):3166-3176, 2021.
https://doi.org/10.1016/j.clinph.2021.09.016
Misa Yoshimoto
Professor, Faculty of Human Life and Environments, Nara Women's University
The autonomic nervous system plays a critical role in maintaining energy metabolic homeostasis through bidirectional communication between the brain and individual organs, yet how this communication dynamically changes and what roles it plays remain largely unclear. Using animal models, we continuously and simultaneously measure vagal nerve activity, sympathetic nerve activity, energy metabolism, and hemodynamics, aiming to elucidate the dynamic coupling among these parameters—an aspect that conventional, fragmentary measurements could not capture. In particular, we are developing a technique for long-term continuous recording of vagal nerve activity, with the goal of decoding the physiological meaning of this bidirectional brain–organ signaling.
Notable Papers
- Yoshimoto M, Miki K. Early DOCA-Salt Hypertension Develops Without Increases in Renal or Lumbar Sympathetic Nerve Activity. Hypertension. 83(9):e26423, 2026.
https://doi.org/10.1161/HYPERTENSIONAHA.125.26423 - Yoshimoto M, et al. Progressive Increase in Renal Sympathetic Nerve Activity Induced by Cold Exposure. Hypertension. 82(4):615-623, 2025.
https://doi.org/10.1161/HYPERTENSIONAHA.124.23499 - Miki K, et al. Method for measuring cervical vagal nerve activity in conscious rats. Am J Physiol Endocrinol Metab. 328(2):E230-E241, 2025.
https://doi.org/10.1152/ajpendo.00184.2024
Group 102-2Understanding and Controlling Organ Pathology for the Prevention and Treatment of Diabetes
Principal investigator
Since the liver is an organ that directly receives food-derived nutrients via the portal vein, its metabolism has a great impact on systemic glucose metabolism and also serves to transmit nutritional information. Furthermore, the liver is an organ capable of producing and releasing glucose. Therefore, by regulating these unique properties of the liver, we aim to explore strategies that lead to the prevention of diabetes, sarcopenia and obesity.
Notable Papers
- Imai J, Katagiri H. Neural regulation and manipulation of pancreatic β cells. Trends Endocrinol Metab in press
- Horiuchi T, et al. Redox-dependent liver gluconeogenesis impacts different intensity exercise in mice. Nat Metab 7(10):1991-2003, 2025.
https://doi.org/10.1038/s42255-025-01373-z - Sato D, et al. One-hour postload glucose levels predict mortality from cardiovascular diseases and malignant neoplasms in healthy subjects. PNAS Nexus. 4(6):pgaf179, 2025.
https://doi.org/10.1093/pnasnexus/pgaf179 - Kawana Y, et al. Optogenetic stimulation of vagal nerves for enhanced glucose-stimulated insulin secretion and β cell proliferation. Nat Biomed Eng. 8(7):808-822, 2024.
https://doi.org/10.1038/s41551-023-01113-2 - Sugawara H, et al. A highly sensitive strategy for monitoring real time proliferations of targeted cell types in vivo. Nat Commun. 14(1):3253, 2023.
https://doi.org/10.1038/s41467-023-38897-5 - Takahashi K, et al. Inter-organ insulin-leptin signal crosstalk from the liver enhances survival during food shortages. Cell Rep. 42(5):112415, 2023.
https://doi.org/10.1016/j.celrep.2023.112415 - Yamamoto J, et al. Neuronal signals regulate obesity induced β-cell proliferation by FoxM1 dependent mechanism. Nat Commun. 8(1):1930, 2017.
https://doi.org/10.1038/s41467-017-01869-7 - Imai J, et al. Regulation of Pancreatic β cell Mass by Neuronal Signals from the Liver. Science 322(5905):1250-4, 2008.
https://doi.org/10.1126/science.1163971 - Uno K, et al. Neuronal pathway from the liver modulates energy expenditure and systemic insulin sensitivity. Science 312(5780):1656-9, 2006.
https://doi.org/10.1126/science.1126010
Chronic inflammation in adipose tissue associated with obesity has been recognized as a key driver of diabetes, highlighting the inflammatory nature of this disease. This project aims to elucidate the role of plasma cells, the terminally differentiated form of B lymphocytes, in obesity and to pave the way for the development of ultra-early diagnostic and preventive strategies for obesity-related diseases, including diabetes.
Notable Papers
- Shirai T, et al. Migration-dependent extrafollicular programming of preplasmablast age-associated B cells drives lupus pathogenesis. J Clin Invest. 136(16):e204095, 2026.
https://doi.org/10.1172/JCI204095 - Ise W, et al. KLF2 expression in IgG plasma cells at their induction site regulates the migration program. J Exp Med. 222(5):e20241019, 2025.
https://doi.org/10.1084/jem.20241019 - Shirai T, et al. Celastrol suppresses humoral immune responses and autoimmunity by targeting the COMMD3/8 complex. Sci Immunol. 8(81):eadc9324, 2023.
https://doi.org/10.1126/sciimmunol.adc9324
Yutaka Hasegawa
Associate Professor, Department of Internal Medicine, Iwate Medical University
We aim to elucidate the mechanisms underlying the prevention and onset of diabetes and to translate this understanding into systemic metabolic regulation and therapeutic strategies. By performing blood metabolome profiling and volatile organic compound analysis before and after bariatric/metabolic surgery in patients with severe obesity, we identify metabolites that contribute to the prevention, onset, and progression of diabetes and obesity, and clarify their biological functions and roles. In addition, candidate proteins involved in the prevention and treatment of obesity and diabetes are extracted from human adipose tissue, and their physiological and pathological significance is analyzed. Furthermore, our screening of thousands of compounds targeting thermogenic uncoupling protein 1 (UCP1) activity in brown adipocytes has led to the identification of several lead compounds capable of enhancing basal metabolism and potentially suppressing obesity and improving diabetes. This research project aims to elucidate their mechanisms of action and to advance drug development through systemic optimization.
Notable Papers
- Onodera K, et al. A newly identified compound activating UCP1 inhibits obesity and its related metabolic disorders. Obesity (Silver Spring). 32(2):324-338, 2024.
https://doi.org/10.1002/oby.23948 - Takebe N, et al. Association of plasminogen activator inhibitor-1 and fibroblastic growth factor 21 in 3 groups of type 2 diabetes: Without overweight/obesity, free of insulin resistance, and without hepatosteatosis. Medicine (Baltimore). 102(35):e34797, 2023.
https://doi.org/10.1097/MD.0000000000034797 - Hasegawa Y. New perspectives on obesity-induced adipose tissue fibrosis and related clinical manifestations. Endocr J. 2022 Jul 28;69(7):739-748, 2022.
https://doi.org/10.1507/endocrj.EJ22-0035 - Matsushita Y, et al. Serum C-X-C motif chemokine ligand 14 levels are associated with serum C-peptide and fatty liver index in type 2 diabetes mellitus patients. J Diabetes Investig. 12(6):1042-1049, 2021.
https://doi.org/10.1111/jdi.13438 - Hasegawa Y, et al. Repression of Adipose Tissue Fibrosis through a PRDM16-GTF2IRD1 Complex Improves Systemic Glucose Homeostasis. Cell Metab. 27(1):180-194.e6, 2018.
https://doi.org/10.1016/j.cmet.2017.12.005
Toshiaki Teratani
Specially Appointed Associate Professor, Keio University School of Medicine
Our research aims to elucidate the gut microbiota–gut–brain network through which microbial and neural signals regulate feeding behavior, intestinal immunity, and systemic metabolism. We investigate how metabolites produced by specific gut microbes are sensed by enteroendocrine cells and transmitted through vagal sensory pathways to shape nutrient preference and metabolic functions. In parallel, we investigate how selective stimulation of the hepatic branch of the vagus nerve regulates intestinal immune homeostasis. Through these studies, we aim to understand how the gut microbiota and vagal neural circuits coordinately regulate behavior, immunity, and metabolism, and ultimately develop novel strategies to improve eating behavior and metabolic diseases by restoring a healthy gut environment.
Notable Papers
- Teratani T, Mikami Y, Kanai T. Neuroimmune crosstalk in the gut and liver. Int Immunol. 34(9):475-484, 2022.
https://doi.org/10.1093/intimm/dxac033 - Teratani T, et al. The liver-brain-gut neural arc maintains the Treg cell niche in the gut. Nature. 585(7826):591-596, 2020.
Group 102-3Preventing Multiple Diseases by Elucidating and Regulating the Mechanisms of Bone Marrow Stress Memory
Principal investigator
We investigate how diverse stresses, including heart failure, imprint lasting memories on the hematopoietic and innate immune systems to drive disease progression and the development of multimorbidity, with the goal of establishing early risk diagnosis and novel preventive and therapeutic strategies.
Notable Papers
- Goto K, et al. Altered bone marrow niche forms central innate immune memory driving cardiac dysfunction. Nat Commun. 17(1):8261, 2026.
https://doi.org/10.1038/s41467-026-76178-z - Nakayama Y, et al. Heart failure promotes multimorbidity through innate immune memory. Sci Immunol. 9(95):eade3814, 2024.
https://doi.org/10.1126/sciimmunol.ade3814 - Hayakawa S, et al. Activated cholesterol metabolism is integral for innate macrophage responses by amplifying Myd88 signaling. JCI Insight. 7(22):e138539, 2022.
https://doi.org/10.1172/jci.insight.138539 - Sugita J, et al. Cardiac macrophages prevent sudden death during heart stress. Nat Commun. 12(1):1910, 2021.
https://doi.org/10.1038/s41467-021-22178-0 - Nakayama Y, et al. A long noncoding RNA regulates inflammation resolution by mouse macrophages through fatty acid oxidation activation. Proc Natl Acad Sci U S A. 117(25):14365-14375, 2020.
https://doi.org/10.1073/pnas.2005924117 - Fujiu K, et al. A heart-brain-kidney network controls adaptation to cardiac stress through tissue macrophage activation and cellular communication. Nat Med. 23(5):611-622, 2017.
https://doi.org/10.1038/nm.4326
Group 102-4Management of Renal and Vascular Comorbidities
Principal investigator
My research aims to elucidate the molecular and metabolic mechanisms that enable organisms to maintain systemic homeostasis during fasting and other nutritional challenges. By integrating metabolomics, epigenomics, stable isotope–based metabolic flux analysis, and multi-organ approaches, I investigate how adaptive metabolic responses coordinate inter-organ communication to preserve energy balance under nutrient-deprived conditions. A particular focus of my work is the role of ketone body metabolism, not only as an alternative energy source but also as a signaling and epigenetic regulator that modulates cellular function and tissue adaptation. I aim to clarify how ketone body production and utilization contribute to metabolic flexibility and organ-specific responses, and how disruption of these adaptive mechanisms impairs tissue homeostasis. Ultimately, my research aims to define the molecular basis by which failure of fasting-induced metabolic adaptation drives the development and progression of diabetic complications, comorbidities, and other metabolic disorders, thereby providing a foundation for novel therapeutic strategies.
Notable Papers
- Omachi S, et al. Ketone Body Supplementation Exerts Renoprotective Effects Against Adenine-Induced Kidney Injury via OXCT1-Mediated Ketolysis in Mice. FASEB J. 40(6):e71650, 2026.
https://doi.org/10.1096/fj.202503908R - Yamahara K, Yasuda-Yamahara M, Kume S. A novel therapeutic target for kidney diseases: Lessons learned from starvation response. Pharmacol Ther. 254:108590, 2024.
https://doi.org/10.1016/j.pharmthera.2024.108590 - Yamahara K, et al. Ketone Body Metabolism in Diabetic Kidney Disease. Kidney360. 5(2):320-326, 2024.
https://doi.org/10.34067/KID.0000000000000359 - Tomita I, et al. Ketone bodies: A double-edged sword for mammalian life span. Aging Cell. 22(6):e13833, 2023.
https://doi.org/10.1111/acel.13833 - Tomita I, et al. SGLT2 Inhibition Mediates Protection from Diabetic Kidney Disease by Promoting Ketone Body-Induced mTORC1 Inhibition. Cell Metab. 32(3):404-419.e6, 2020.
https://doi.org/10.1016/j.cmet.2020.06.020
Kuniyasu Niizuma
Professor, Graduate School of Biomedical Engineering, Tohoku University
We focus on stroke as a major complication of diabetes and regard diabetes as an important pre-disease stage in the development of stroke. Our research aims to establish novel strategies both to prevent stroke in patients with diabetes and to treat diabetes-associated stroke, which is often linked to an increased risk of severe outcomes. In particular, we focus on transfer RNA (tRNA), including its modification and metabolism, as a previously underexplored regulatory layer in the pathophysiology of diabetes and stroke. By elucidating how alterations in tRNA-related pathways contribute to the transition from diabetes to stroke onset and subsequent brain injury, we aim to uncover novel disease mechanisms that cannot be fully explained by conventional approaches. Ultimately, we seek to translate these findings into new preventive and therapeutic strategies for stroke associated with diabetes.
Notable Papers
- Rashad S, Niizuma K. G/C-ending and synonymous codon bias define functional translational programs that shape human tissue and cancer proteomes. NAR Genom Bioinform. 8(2):lqag033, 2026.
https://doi.org/10.1093/nargab/lqag033 - Al-Mesitef S, et al. Context-specific Angiogenin-mediated tRNA fragments (tDRs) biogenesis shapes the mitochondrial stress response. Redox Biol. 90:104038, 2026.
https://doi.org/10.1016/j.redox.2026.104038 - Ando D, et al. Decoding Codon Bias: The Role of tRNA Modifications in Tissue-Specific Translation. Int J Mol Sci. 26(2):706, 2025.
https://doi.org/10.3390/ijms26020706 - Zhou Y, et al. Dynamic mRNA Stability Buffer Transcriptional Activation During Neuronal Differentiation and Is Regulated by SAMD4A. J Cell Physiol. 240(1):e31477, 2025.
https://doi.org/10.1002/jcp.31477
Kazuto Masamoto
Professor, Graduate School of Informatics and Engineering, University of Electro-Communications
We aim to establish a multimodal analytical platform to capture the disruption of microvascular endothelium integrity homeostasis in the early stages of diabetes. Our primary goal is to quantitatively define the initial processes by which humoral factors such as endothelin, triggered by hypoxia and inflammation, induce downstream microvessel contraction and glycocalyx shedding. Furthermore, we are advancing non-invasive microcirculation monitoring by integrating AI-based automated analysis into nailfold video capillaroscopy (NVC). By extracting precise features of capillary functions and blood flow fluctuations from large-scale datasets, we aim to develop an early screening technology for the prediction and personalized prevention of vascular complications.
Notable Papers
- Suzuki H, et al. A non-invasive approach to monitoring microcirculatory health before and after hemodialysis in renal patients using nailfold video capillaroscopy with optical reflectance analysis. Geroscience. 47(5):6473-6486, 2025.
https://doi.org/10.1007/s11357-025-01700-y - Masamoto K. Optical imaging of microvascular function in the brain. IEEE Journal of Selected Topics in Quantum Electronics. 31(4), 2025.
https://doi.org/10.1109/JSTQE.2025.3550356 - Suzuki H, et al. Microfluctuations in Capillary Lumens Independent of Pericyte Lining Density in the Anesthetized Mouse Cortex. Microcirculation. 31(8):e12885, 2024.
https://doi.org/10.1111/micc.12885 - Murata J, et al. Acceleration of the Development of Microcirculation Embolism in the Brain due to Capillary Narrowing. Stroke. 54(8):2135-2144, 2023.
https://doi.org/10.1161/STROKEAHA.122.042416 - Suzuki H, et al. Capillary responses to functional and pathological activations rely on the capillary states at rest. J Cereb Blood Flow Metab. 43(6):1010-1024, 2023.
https://doi.org/10.1177/0271678X231156372 - Niizawa T, et al. Spatiotemporal analysis of blood plasma and blood cell flow fluctuations of cerebral microcirculation in anesthetized rats. J Cereb Blood Flow Metab. 43(1):138-152, 2023.
https://doi.org/10.1177/0271678X221125743
Group 103Development of Methods for the Prevention and Treatment of Diabetes and Comorbidities
Group 103-1Development of Methods for the Prevention and Treatment of Diabetes Through Vagus Nerve Stimulation
Principal investigator
We obtained results from animal experiments showing that stimulating the vagal nerve innervating the pancreas can increase pancreatic beta cells. Therefore, to determine whether mechanical vagal nerve stimulation increases pancreatic beta cells in humans and, furthermore, whether it can prevent or treat diabetes, we will proceed with clinical trials using vagal nerve stimulation devices.
Notable Papers
- Imai J, Katagiri H. Neural regulation and manipulation of pancreatic β cells. Trends Endocrinol Metab in press
- Horiuchi T, et al. Redox-dependent liver gluconeogenesis impacts different intensity exercise in mice. Nat Metab 7(10):1991-2003, 2025.
https://doi.org/10.1038/s42255-025-01373-z - Sato D, et al. One-hour postload glucose levels predict mortality from cardiovascular diseases and malignant neoplasms in healthy subjects. PNAS Nexus. 4(6):pgaf179, 2025.
https://doi.org/10.1093/pnasnexus/pgaf179 - Kawana Y, et al. Optogenetic stimulation of vagal nerves for enhanced glucose-stimulated insulin secretion and β cell proliferation. Nat Biomed Eng. 8(7):808-822, 2024.
https://doi.org/10.1038/s41551-023-01113-2 - Sugawara H, et al. A highly sensitive strategy for monitoring real time proliferations of targeted cell types in vivo. Nat Commun. 14(1):3253, 2023.
https://doi.org/10.1038/s41467-023-38897-5 - Takahashi K, et al. Inter-organ insulin-leptin signal crosstalk from the liver enhances survival during food shortages. Cell Rep. 42(5):112415, 2023.
https://doi.org/10.1016/j.celrep.2023.112415 - Yamamoto J, et al. Neuronal signals regulate obesity induced β-cell proliferation by FoxM1 dependent mechanism. Nat Commun. 8(1):1930, 2017.
https://doi.org/10.1038/s41467-017-01869-7 - Imai J, et al. Regulation of Pancreatic β cell Mass by Neuronal Signals from the Liver. Science 322(5905):1250-4, 2008.
https://doi.org/10.1126/science.1163971 - Uno K, et al. Neuronal pathway from the liver modulates energy expenditure and systemic insulin sensitivity. Science 312(5780):1656-9, 2006.
https://doi.org/10.1126/science.1126010
Kuniyasu Niizuma
Professor, Graduate School of Biomedical Engineering, Tohoku University
This study aims to translate preclinical findings showing that vagus nerve stimulation (VNS) can increase pancreatic β-cell mass and improve glucose metabolism into a clinical setting. Patients who are scheduled to undergo VNS device implantation will be prospectively evaluated beginning before implantation. Diabetes-related parameters, including glucose control and insulin secretion, will be measured at baseline and longitudinally after VNS initiation, allowing within-patient assessment of physiological changes induced by stimulation. Through this approach, we aim to determine whether VNS influences pancreatic β-cell function and systemic glucose metabolism in humans. By bridging preclinical evidence with longitudinal human data, this study seeks to clarify neural regulation of pancreatic function and explore the potential of neuromodulation as a novel strategy for the prevention or treatment of diabetes.
Notable Papers
- Kawana Y, et al. Optogenetic stimulation of vagal nerves for enhanced glucose-stimulated insulin secretion and β cell proliferation. Nat Biomed Eng. 8(7):808-822, 2024.
https://doi.org/10.1038/s41551-023-01113-2
Group 103-2Development of Diabetes Prevention Methods Through the Understanding and Regulation of Inter-Organ Networks
Principal investigator
We will elucidate the full picture—including the molecular mechanisms—of the inter-organ communication that promotes to increase pancreatic β-cells. We aim to identify chemical compounds that can prevent/treat diabetes through the increase in pancreatic β-cells by stimulating this interorgan network. In this project, we aim to obtain findings which will provide the basis for clinical trials.
Notable Papers
- Imai J, Katagiri H. Neural regulation and manipulation of pancreatic β cells. Trends Endocrinol Metab in press
- Horiuchi T, et al. Redox-dependent liver gluconeogenesis impacts different intensity exercise in mice. Nat Metab 7(10):1991-2003, 2025.
https://doi.org/10.1038/s42255-025-01373-z - Sato D, et al. One-hour postload glucose levels predict mortality from cardiovascular diseases and malignant neoplasms in healthy subjects. PNAS Nexus. 4(6):pgaf179, 2025.
https://doi.org/10.1093/pnasnexus/pgaf179 - Kawana Y, et al. Optogenetic stimulation of vagal nerves for enhanced glucose-stimulated insulin secretion and β cell proliferation. Nat Biomed Eng. 8(7):808-822, 2024.
https://doi.org/10.1038/s41551-023-01113-2 - Sugawara H, et al. A highly sensitive strategy for monitoring real time proliferations of targeted cell types in vivo. Nat Commun. 14(1):3253, 2023.
https://doi.org/10.1038/s41467-023-38897-5 - Takahashi K, et al. Inter-organ insulin-leptin signal crosstalk from the liver enhances survival during food shortages. Cell Rep. 42(5):112415, 2023.
https://doi.org/10.1016/j.celrep.2023.112415 - Yamamoto J, et al. Neuronal signals regulate obesity induced β-cell proliferation by FoxM1 dependent mechanism. Nat Commun. 8(1):1930, 2017.
https://doi.org/10.1038/s41467-017-01869-7 - Imai J, et al. Regulation of Pancreatic β cell Mass by Neuronal Signals from the Liver. Science 322(5905):1250-4, 2008.
https://doi.org/10.1126/science.1163971 - Uno K, et al. Neuronal pathway from the liver modulates energy expenditure and systemic insulin sensitivity. Science 312(5780):1656-9, 2006.
https://doi.org/10.1126/science.1126010
Tetsuya Yamada
Professor, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University
We are developing strategies to prevent diabetes by promoting energy metabolism at the individual level. Specifically, we aim to elucidate the molecular mechanisms of energy metabolism in the inter-organ network consisting of "liver - vagus nerve - brain - sympathetic nerve - peripheral tissues and cells (brown adipose tissue (BAT), beige adipocytes, adrenal glands, etc.)" and each tissue that constitutes the network, thereby proposing strategies that contribute to the prevention of diabetes by promoting energy metabolism at the individual level.
Notable Papers
- Koga D, et al. Artificial intelligence identifies individuals with prediabetes using single-lead electrocardiograms. Cardiovasc Diabetol. 24(1):415, 2025.
https://doi.org/10.1186/s12933-025-02982-4 - Horino M, et al. Car4-positive adipocyte progenitor cells adapt to the aging environment and work as protection against ROS via glutathione metabolism. Sci Rep. 15(1):31922, 2025.
https://doi.org/10.1038/s41598-025-17231-7 - Takeuchi A, et al. Sex difference in BAT thermogenesis depends on PGC-1α-mediated phospholipid synthesis in mice. Nat Commun. 16(1):6072, 2025.
https://doi.org/10.1038/s41467-025-61219-w - Murakami M, et al. Single-Nucleus Analysis Reveals Tumor Heterogeneity of Aldosterone-Producing Adenoma. Hypertension. 81(2):361-371, 2024.
https://doi.org/10.1161/HYPERTENSIONAHA.123.21446
This project aims to elucidate the mechanisms by which dietary and gut microbiota-derived lipid metabolites regulate host homeostasis through membrane receptors. We particularly focus on understanding the multi-organ energy metabolism network originating from the intestine and its regulation by diet and the intestinal environment. By identifying novel metabolites and receptor-mediated signals that enhance physiological resilience and homeostasis, we seek to establish new strategies for preventing diabetes and related metabolic disorders and ultimately translate these findings into the development of functional supplements and therapeutic agents.
Notable Papers
- Ikeda T, et al. The free fatty acid receptor GPR164 maintains intestinal homeostasis and barrier function. EMBO Rep. 26(23):5905-5930, 2025.
https://doi.org/10.1038/s44319-025-00611-5 - Watanabe K, et al. Maternal progesterone and adipose mPRε in pregnancy regulate the embryonic nutritional state. Cell Rep. 44(3):115433, 2025.
https://doi.org/10.1016/j.celrep.2025.115433 - Shimizu H, et al. Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides. Nat Commun. 16(1):1145, 2025.
https://doi.org/10.1038/s41467-025-56470-0 - Miyamoto J, et al. Host metabolic benefits of prebiotic exopolysaccharides produced by Leuconostoc mesenteroides. Gut Microbes. 15(1):2161271, 2023.
https://doi.org/10.1080/19490976.2022.2161271 - Ohue-Kitano R, et al. Medium-chain fatty acids suppress lipotoxicity-induced hepatic fibrosis via the immunomodulating receptor GPR84. JCI Insight. 8(2):e165469, 2023.
https://doi.org/10.1172/jci.insight.165469
Group 103-3Development of Preventive and Therapeutic Approaches for Diabetes and Obesity Using Composite Probiotics
Principal investigator
This project aims to elucidate how gut microbiota metabolize dietary carbohydrates and how the resulting metabolites influence host health, with the goal of developing beneficial microorganisms and their metabolites as functional food ingredients for diabetes prevention. Using probiotic candidate strains identified through this project, we will develop a multi-biotic formulation and conduct preclinical studies and formulation development for human use. Its efficacy and safety will subsequently be evaluated in clinical trials to validate in humans the beneficial effects demonstrated in animal models. Ultimately, we aim to establish the evidence required for commercialization as a functional food and dietary supplement for the prevention of diabetes.
Notable Papers
- Ikeda T, et al. The free fatty acid receptor GPR164 maintains intestinal homeostasis and barrier function. EMBO Rep. 26(23):5905-5930, 2025.
https://doi.org/10.1038/s44319-025-00611-5 - Watanabe K, et al. Maternal progesterone and adipose mPRε in pregnancy regulate the embryonic nutritional state. Cell Rep. 44(3):115433, 2025.
https://doi.org/10.1016/j.celrep.2025.115433 - Shimizu H, et al. Sucrose-preferring gut microbes prevent host obesity by producing exopolysaccharides. Nat Commun. 16(1):1145, 2025.
https://doi.org/10.1038/s41467-025-56470-0 - Miyamoto J, et al. Host metabolic benefits of prebiotic exopolysaccharides produced by Leuconostoc mesenteroides. Gut Microbes. 15(1):2161271, 2023.
https://doi.org/10.1080/19490976.2022.2161271 - Ohue-Kitano R, et al. Medium-chain fatty acids suppress lipotoxicity-induced hepatic fibrosis via the immunomodulating receptor GPR84. JCI Insight. 8(2):e165469, 2023.
https://doi.org/10.1172/jci.insight.165469
Group 104Understanding Homeostasis and Pathology Through Mathematical and Computational Science Approaches
Group 104-1Understanding and Controlling Homeostasis Through Mathematical Model Analysis
Principal investigator
Hiroshi Suito
Professor, Advanced Institute for Materials Research, Tohoku University
Our research group is responsible for mathematical modeling of the circulatory system—a critical pathway in inter-organ networks—and its application to analyzing diabetic comorbidities. Because the circulatory system operates across multiple scales, capturing its fluid dynamics requires an integrated representation of the entire network. To achieve this, we build and implement mathematical models that combine systems of partial differential equations (PDEs), ordinary differential equations (ODEs), parameter identification procedures, and techniques for balancing these complex systems.
Notable Papers
- Liu J, et al. Multiscale modeling of blood circulation with cerebral autoregulation and network pathway analysis for hemodynamic redistribution in the vascular network with anatomical variations and stenosis conditions. PLoS Comput Biol. 22(5):e1013853, 2026.
https://doi.org/10.1371/journal.pcbi.1013853
Masaharu Nagayama
Professor, Research Institute for Electronic Science, Hokkaido University
This research project aims to integrate a whole-body circulatory network model based on glucose and insulin dynamics with machine learning to elucidate and predict ultra-early pathological states during the transition from health to the onset of diabetes. By advancing the mathematical model, we seek to clarify the mechanisms underlying the development of diabetes and identify indicators that capture ultra-early disease stages. Furthermore, we will develop a machine-learning model incorporating features derived from the mathematical model, enabling estimation of the probability of diabetes onset and classification of ultra-early disease stages from individual OGTT data, ultimately leading to a personalized prediction system.
Notable Papers
- 野田裕真,内海晋弥,上田祐暉, 水藤寛,片桐秀樹,長山雅晴. グルコース・インスリンダイナミクスモデルを用いた大迫コホートデータのデータ分析. 計算工学講演会論文集 Vol. 31, 2026.
- Ueda Y, et al. A Mechanism-Based Multiscale Mathematical Model of Whole-Body Glucose, Insulin, and C-Peptide Dynamics, submitted in PLoS One.
Within cells, many molecules interact with one another and continuously change their states in response to external signals. In this study, we reconstruct intracellular signalling dynamics as mathematical models from omics data and use mathematics to uncover the principles that govern these dynamics. We then aim to infer metabolic states at the organ and whole-body levels from cellular responses. By connecting these approaches, we seek to build a new research framework that integrates mathematics and medicine, with the ultimate goal of contributing to the prediction and control of diabetes and its comorbidities.
Notable Papers
- Iida K, Okada M. Identifying key regulatory genes in drug resistance acquisition: Modeling pseudotime trajectories of breast cancer single-cell transcriptome. Cancers (Basel). 16(10):1884, 2024.
https://doi.org/10.3390/cancers16101884 - Iida K, et al. ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes. Bioinformatics. 38(18):4330-4336, 2022.
https://doi.org/10.1093/bioinformatics/btac541 - Iida K, Obata N, Kimura Y. Quantifying heterogeneity of stochastic gene expression. J Theor Biol. 465:56-62, 2019.
https://doi.org/10.1016/j.jtbi.2019.01.003
Group 104-2Understanding and Applications of Homeostasis Through an Information Science Approach
Principal investigator
Our organs do not work in isolation. The liver, fat tissue, and pancreas constantly exchange signals with the brain through nerves, and this inter-organ network keeps blood glucose stable. Diabetes is thought to begin when the network starts to drift, long before anything abnormal appears in a blood test. My role is to make sense of the data that captures these early changes. Together with the experimental groups in the project, I analyze single-cell RNA sequencing data, which measures gene activity in individual cells, from tissues including the pancreas, adipose tissue, and the vagal ganglia that relay signals from the liver to the brain. Pinpointing which nerve cell types respond to a liver signal is hard: the cells are rare and published classifications disagree. We therefore adapted an AI foundation model trained on tens of millions of cells, which lets us resolve far finer subtypes than before. I also maintain the shared data infrastructure of the project and hand the results to our mathematical modeling colleagues, so that biology and mathematics work together toward a future in which diabetes is found before it develops.
Notable Papers
- Sriwichaiin S, et al. JG2: an updated version of the Japanese population-specific reference genome. Hum Genome Var. 12(1):21, 2025.
https://doi.org/10.1038/s41439-025-00326-y - Takayama J, et al. A fine-scale genetic map of the Japanese population. Clin Genet. 106(3):284-292, 2024.
https://doi.org/10.1111/cge.14536
Masaki Nagao
Assistant Professor, Graduate School of Medicine, The University of Tokyo
Constructing a developmental atlas of fetal mice under normal and gestational diabetic conditions. Establishing an AAV-based mouse model of central nervous system insulin resistance to investigate sleep–wake regulation and neurovascular alterations.
Notable Papers (Achievements to Date on This Project)
- Yoshida SY, et al. Whole-organ and whole-body 3D atlases enable cellome-wide profiling. Cell. 189(6):1836-1853.e19, 2026.
https://doi.org/10.1016/j.cell.2025.12.057 - Yamashita K, et al. A whole-brain single-cell atlas of circadian neural activity in mice. Science. 391(6787):eaea3381, 2026.
https://doi.org/10.1126/science.aea3381 - Matsumoto K, et al. DECODE enables high-throughput mapping of antibody epitopes at single amino acid resolution. PLoS Biol. 23(1):e3002707, 2025.
https://doi.org/10.1371/journal.pbio.3002707 - Akiyama F, et al. A multiwell plate approach to increase the sample throughput during tissue clearing. Nat Protoc. 20(4):967-988, 2025.
https://doi.org/10.1038/s41596-024-01080-1 - Yamada RG, et al. An automated sleep staging tool based on simple statistical features of mice electroencephalography (EEG) and electromyography (EMG) data. Eur J Neurosci. 60(7):5467-5486, 2024.
https://doi.org/10.1111/ejn.16465
Diabetes develops through gradual changes across multiple organs and cell types long before clinical symptoms appear. In this project, we will use AI foundation models to analyze and integrate single-cell gene expression data from tissues throughout the body in humans and experimental models. By integrating representations of individual tissues, we aim to model how coordinated whole-body systems progressively lose their balance and transition toward diabetes in a high-dimensional space. We will further combine these models with diverse biological and clinical data collected from cohort studies. Through this integrated approach, we seek to characterize the pre-disease state of diabetes, predict future disease risk, and identify new targets for prevention and early intervention.
Notable Papers
- Kobayashi H, et al. Geneformer-guided multiomics integration identifies Pbx1 as a network hub of hematopoietic stem cell aging. Sci Adv. 12(34):eaeb1346, 2026.
https://doi.org/10.1126/sciadv.aeb1346 - Watanuki S, et al. SDHAF1 confers metabolic resilience to aging hematopoietic stem cells by promoting mitochondrial ATP production. Cell Stem Cell. 31(8):1145–1161.e15, 2024.
https://doi.org/10.1016/j.stem.2024.04.023 - Watanuki S, et al. Context-dependent modification of PFKFB3 in hematopoietic stem cells promotes anaerobic glycolysis and ensures stress hematopoiesis. eLife. 12:RP87674, 2024.
https://doi.org/10.7554/eLife.87674
